The internal pages are a place for
Information for new arrivals can be found [here].
Michael 2021-05-20: more ...
Running annotations about data structure modifications…
Driven by a Beacon-implementation paradigm (REST paths like
it is necessary for a general solution to have the
id parameter being dataset
specific (i.e. EGA only has one table but uses internal lookups). Since we have
several datasets, the easiest way is to have identifying “particles” in the ids -
which we actually already have for progenetix with
Now, variants have been re-labeled for their ids using the code below. The
idmatch parameters are stored in bycon (
@mbaudis 2021-02-09: more ...
We need space for:
Michael 2021-01-27: more ...
This page provides the guide fo the annotation and code normalization of sample diagnosis data.
@mbaudis 2020-05-27: more ...
Michael 2020-03-31: more ...
Information about the hardware can be found here.
In hg18/ are files which were processed before the new aroma pipeline by QH.
In hg19/ are files processed with the new pipeline, which overlap with some series in hg18.
All files in both folders are converted to hg38 in the folders hg18-hg38/ and hg19-hg38/.
Then, both folders are merged to
grch38/. As there’s much less inconsistency between hg19 and hg38, if files exist in both hg18-hg38/ and hg19-hg38/, files from latter are prefered.
Network access info:
arraymapMirror/ from 126.96.36.199 are mirrored to
arrayData/arraymap/grch38 in 188.8.131.52
2020-03-31: more ...
This page describes the recommended setup & configuration steps for getting an OSX machine (no matter if server or laptop) configured for work in the baudisgroup environment.
2020-01-31: more ...